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Foldover Features for Dynamic Object Behaviour Description in Microscopic Videos

Xialin Li, Chen Li, Frank Kulwa, Md Mamunur Rahaman, Wenwei Zhao, Xue Wang, Dan Xue, Yudong Yao, Yilin Cheng, Jindong Li, Shouliang Qi, Tao Jiang
2020 IEEE Access  
In the experiment, we use a microscopic sperm video dataset to evaluate the proposed foldover features, including three types of 1374 sperms, and obtain the highest classification accuracy of 96.5%.  ...  It plays a fundamental role in the identification and classification of dynamic objects in microscopic videos. To this end, we propose foldover features to describe the behavior of dynamic objects.  ...  However, the above method is not applicable to the identification and analysis of multi-target motion in microscopic sperm videos.  ... 
doi:10.1109/access.2020.3003993 fatcat:5ilqyq4qgffbbjt75fjxni32oe

Life is a Circus and We are the Clowns: Automatically Finding Analogies between Situations and Processes [article]

Oren Sultan, Dafna Shahaf
2023 arXiv   pre-print
We show it can extract analogies from a large dataset of procedural texts, achieving 79% precision (analogy prevalence in data: 3%).  ...  We develop an interpretable, scalable algorithm and demonstrate that it identifies the correct mappings 87% of the time for procedural texts and 94% for stories from cognitive-psychology literature.  ...  Acknowledgements We would like to thank Aniket Kittur and Joel Chan for their valuable feedback and ideas, the Hyadata Lab and NLP-HUJI members for their thoughtful remarks, and all the participants in  ... 
arXiv:2210.12197v2 fatcat:67ps44vxzveldgs6jjvdq5fwy4

A State-of-the-art Survey for Microorganism Image Segmentation Methods and Future Potential

Frank Kulwa, Chen Li, Xin Zhao, Bencheng Cai, Ning Xu, Shouliang Qi, Shuo Chen, Yueyang Teng
2019 IEEE Access  
However, some of them are harmful to humans and animals such as tuberculosis bacteria and plasmodium.  ...  In such course, it is important to identify, track, analyze, consider the beneficial side and get rid of the negative effects of microorganisms using fast, accurate, and reliable methods.  ...  low contrast sperm tracking [130] and rat sperm image segmentation and counting [131] .  ... 
doi:10.1109/access.2019.2930111 fatcat:3xuu5nj7xnfdhpt6nsvrrlbe5u

Biological Aging Acceleration Due to Environmental Exposures: An Exciting New Direction in Toxicogenomics Research

Sudipta Dutta, Jaclyn M. Goodrich, Dana C. Dolinoy, Douglas M. Ruden
2023 Genes  
Biological clock technologies are designed to assess the acceleration of biological age (B-age) in diverse cell types, offering a distinctive opportunity in toxicogenomic research to explore the impact  ...  Over the past decade, researchers in epigenetics have developed testing methods that predict the chronological and biological age of organisms.  ...  Conflicts of Interest: The authors declare no conflicts of interest.  ... 
doi:10.3390/genes15010016 pmid:38275598 pmcid:PMC10815440 fatcat:rtmodj7itrd47jfwkvxubcuf6u

A program of successive gene expression in mouse one-cell embryos

Maki Asami, Brian Y.H. Lam, Martin Hoffmann, Toru Suzuki, Xin Lu, Naoko Yoshida, Marcella K. Ma, Kara Rainbow, Miodrag Gužvić, Matthew D. VerMilyea, Giles S.H. Yeo, Christoph A. Klein (+1 others)
2023 Cell Reports  
At the moment of union in fertilization, sperm and oocyte are transcriptionally silent.  ...  The ensuing onset of embryonic transcription (embryonic genome activation [EGA]) is critical for development, yet its timing and profile remain elusive in any vertebrate species.  ...  (D) Schematic showing interactions between human mismatch repair proteins in mitotic and meiotic cells 57 whose transcripts were evaluated in (C).  ... 
doi:10.1016/j.celrep.2023.112023 pmid:36729835 fatcat:4rfr73jt4zedpc57bmlnwlnppm

Adsorption and diffusion on a stepped surface: Atomic hydrogen on Pt(211)

R. A. Olsen, Ş. C. Bădescu, S. C. Ying, E. J. Baerends
2004 Journal of Chemical Physics  
Spontaneity of the synthesized speech was evaluated by subjective pair comparison tests.  ...  Electroacoustic transducers are central components of multi-frequency echosounders used in remote target identification and acoustical surveys for fish and zooplankton.  ... 
doi:10.1063/1.1755664 pmid:15268219 fatcat:qgbl7hbggvan7eyuyiow2d4yhy

Auralization of an orchestra using multichannel and multisource technique

Michelle C. Vigeant, Lily M. Wang, Jens Holger Rindel
2006 Journal of the Acoustical Society of America  
Spontaneity of the synthesized speech was evaluated by subjective pair comparison tests.  ...  Electroacoustic transducers are central components of multi-frequency echosounders used in remote target identification and acoustical surveys for fish and zooplankton.  ...  Performance of multibin ICA is compared with those of conventional frequency-domain ICA and permutation-free ICA employing segmental SNR as an evaluation index. ͓  ... 
doi:10.1121/1.4787034 fatcat:brilcvuxpbgdvpdfzwovehoary

A transparency model and its applications for simulation of reflector arrays and sound transmission

Claus Lynge Christensen, Jens Holger Rindel
2006 Journal of the Acoustical Society of America  
Spontaneity of the synthesized speech was evaluated by subjective pair comparison tests.  ...  Electroacoustic transducers are central components of multi-frequency echosounders used in remote target identification and acoustical surveys for fish and zooplankton.  ...  Performance of multibin ICA is compared with those of conventional frequency-domain ICA and permutation-free ICA employing segmental SNR as an evaluation index. ͓  ... 
doi:10.1121/1.4786982 fatcat:uh2zucni3zaa5nnkivc5sh5tpq

CFAP45 deficiency causes situs abnormalities and asthenospermia by disrupting an axonemal adenine nucleotide homeostasis module

Gerard W. Dougherty, Katsutoshi Mizuno, Tabea Nöthe-Menchen, Yayoi Ikawa, Karsten Boldt, Asaf Ta-Shma, Isabella Aprea, Katsura Minegishi, Yuan-Ping Pang, Petra Pennekamp, Niki T. Loges, Johanna Raidt (+39 others)
2020 Nature Communications  
Here, we describe a deficiency of cilia and flagella associated protein 45 (CFAP45) in humans and mice that presents a motile ciliopathy featuring situs inversus totalis and asthenospermia.  ...  Microtubule sliding of dyskinetic sperm from Cfap45−/− mice is rescued with the addition of either AMP or ADP with ATP, compared to ATP alone.  ...  WES data is available in a restricted manner due to privacy considerations and is contingent on the approval of the Institutional Ethics Review Board from the University Hospital Münster (Germany) and  ... 
doi:10.1038/s41467-020-19113-0 pmid:33139725 fatcat:du64x2j3tbchdf5zgz46vxhevm

A garter snake transcriptome: pyrosequencing, de novo assembly, and sex-specific differences

Tonia S Schwartz, Hongseok Tae, Youngik Yang, Keithanne Mockaitis, John L Van Hemert, Stephen R Proulx, Jeong-Hyeon Choi, Anne M Bronikowski
2010 BMC Genomics  
Conclusions: This is the first large-scale, multi-organ transcriptome for an ectothermic reptile.  ...  Assembly of the cleaned reads from both sexes with NEWBLER and MIRA resulted in 96,379 contigs containing 87% of the cleaned reads.  ...  All authors contributed to the interpretation of the results and the content of the final manuscript.  ... 
doi:10.1186/1471-2164-11-694 pmid:21138572 pmcid:PMC3014983 fatcat:5db563d27zc23axrdpuw2v2eyy

Review of Automatic Detection and Classification Techniques for Cetacean Vocalization

Ayinde M. Usman, Olayinka O. Ogundile, Daniel J. J. Versfeld
2020 IEEE Access  
Cetaceans have elicited the attention of researchers in recent decades due to their importance to the ecosystem and their economic values.  ...  In this article, we review the existing techniques for the automatic detection and classification of cetacean vocalizations.  ...  of the target.  ... 
doi:10.1109/access.2020.3000477 fatcat:kyjwsw25wzdkdoey2gh6zlzva4

Comparative whole genome DNA methylation profiling across cattle tissues reveals global and tissue-specific methylation patterns

Yang Zhou, Shuli Liu, Yan Hu, Lingzhao Fang, Yahui Gao, Han Xia, Steven G. Schroeder, Benjamin D. Rosen, Erin E. Connor, Cong-jun Li, Ransom L. Baldwin, John B. Cole (+4 others)
2020 BMC Biology  
Similar to human PMD, cattle PMDs were often linked to a general decrease of gene expression and a decrease in active histone marks and related to long-range chromatin organizations, like topologically  ...  Although DNA methylation has been well studied in humans and other model species, its distribution patterns and regulatory impacts in cattle are still largely unknown.  ...  Human WGBS datasets of the liver (SRR3269859), kidney, (SRR1654399, SRR1654400, and SRR1764401) [74] , and placenta (SRX381710) [13] were downloaded from NCBI Sequence Read Archive, respectively.  ... 
doi:10.1186/s12915-020-00793-5 pmid:32631327 fatcat:ec3vkf5clfcttad3p5vqoqoowu

Role ofCnot6lin maternal mRNA turnover

Filip Horvat, Helena Fulka, Radek Jankele, Radek Malik, Ma Jun, Katerina Solcova, Radislav Sedlacek, Kristian Vlahovicek, Richard M Schultz, Petr Svoboda
2018 Life Science Alliance  
We show thatCnot6lapparently supplies the majority of CCR4 in the maternal CCR4-NOT in mouse, hamster, and bovine oocytes.  ...  A minimal overlap between transcripts sensitive to decapping inhibition andCnot6lloss suggests that decapping and CNOT6L-mediated deadenylation selectively target distinct subsets of mRNAs during oocyte-to-embryo  ...  ) algorithms.  ... 
doi:10.26508/lsa.201800084 fatcat:lvnlh5unirakxiv6jnul7vh2w4

Robots Enact Malignant Stereotypes [article]

Andrew Hundt, William Agnew, Vicky Zeng, Severin Kacianka, Matthew Gombolay
2022 arXiv   pre-print
In this paper, we evaluate how ML bias manifests in robots that physically and autonomously act within the world.  ...  CLIP) that contain humans risk physically amplifying malignant stereotypes in general; and that merely correcting disparities will be insufficient for the complexity and scale of the problem.  ...  Hager for the use of compute resources. We would like to thank Arjun Subramonian and Luca Soldaini for discussion on the ethics of creating or using face datasets with nonbinary people.  ... 
arXiv:2207.11569v1 fatcat:brghxmr3mjhvdpxw3qlwxdw7mm

OUP accepted manuscript

2018 Database: The Journal of Biological Databases and Curation  
This exceeds the processing capacity of human domain experts, limiting our ability to truly understand many diseases.  ...  mutually exclusive altered signaling pathways in seven different cancer types.  ...  Acknowledgments We thank MITRE for defining and implementing the evaluation described in Section 4.1.  ... 
doi:10.1093/database/bay098 fatcat:xpnrphqq6jgsbeuafu5pogr2uq
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