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Set yticklabels = True for heatmap visualiations in Pixie#1157

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alex-l-kong wants to merge 1 commit into
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yticks_true
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Set yticklabels = True for heatmap visualiations in Pixie#1157
alex-l-kong wants to merge 1 commit into
mainfrom
yticks_true

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@alex-l-kong

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What is the purpose of this PR?

Closes #1146. When there are too many labels on the y-axis of a heatmap, Seaborn may not show all of them. There needs to be a way to accomplish this so that even if the user has multiple channels on the y-axis, for example, all of them can be mapped to one column.

How did you implement your changes

Pass in yticklabels=True by default to sns.clustermap per @cliu72's tests.

@alex-l-kong alex-l-kong self-assigned this Sep 20, 2024
@alex-l-kong alex-l-kong requested a review from cliu72 September 20, 2024 18:45
@alex-l-kong

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@cliu72 the failing tests are due to the ongoing pytorch issue (#1150)

@cliu72 cliu72 left a comment

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Wow sorry I missed this aaaages ago, but looks good to me

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Visualize all markers and cluster names in cell cluster heatmap

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