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Pull requests: angelolab/ark-analysis

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Pull requests list

Bump Python version in testing and release workflows
#1198 opened Jan 7, 2026 by alex-l-kong Contributor Loading…
@alex-l-kong
Replace HF Datasets with Pooch
#1191 opened Mar 14, 2025 by srivarra Contributor • Draft
@srivarra
Ensure proper handling of np.nan in regionprops
#1190 opened Mar 14, 2025 by alex-l-kong Contributor Loading…
@alex-l-kong
Ensure _temp dir does not interfere with pixel SOM and consensus cluster assignment
#1183 opened Mar 11, 2025 by alex-l-kong Contributor Loading…
@alex-l-kong
1
Add functionality to split large nuclei for nuclear normalization
#1173 opened Nov 7, 2024 by alex-l-kong Contributor Loading…
1
1
Set yticklabels = True for heatmap visualiations in Pixie
#1157 opened Sep 20, 2024 by alex-l-kong Contributor Loading…
1
@alex-l-kong
2
Enforce consistent channel ordering in Pixie
#1152 opened Aug 29, 2024 by alex-l-kong Contributor Loading…
@alex-l-kong
3
Make row sum normalization optional for pixel-level Pixie preprocessing
#1140 opened May 23, 2024 by alex-l-kong Contributor • Draft
@alex-l-kong
1
AnnData spatial analysis 1 enhancement New feature or request
#1112 opened Jan 25, 2024 by camisowers Contributor • Draft
2 of 3 tasks
1
@camisowers
2
Interactive files
#1063 opened Sep 14, 2023 by alex-l-kong Contributor Loading…
1
@alex-l-kong
26
Bump requests from 2.28.0 to 2.31.0 in /docs dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1003 opened May 23, 2023 by dependabot Bot Loading…
ProTip! Updated in the last three days: updated:>2026-06-09.