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Automatic in vivo microscopy video mining for leukocytes
2007
SIGKDD Explorations
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In this paper, we present an automatic spatiotemporal mining system of rolling and adherent leukocytes for intravital videos. ...
Automatic spatiotemporal mining of moving cells from in vivo microscopy videos is extremely difficult because of the severe noises, camera/subject movements, deformations, and strong dependencies on microscopy ...
VIDEO FRAME ALIGNMENT The automatic mining of in vivo microscopy video is difficult. ...
doi:10.1145/1294301.1294309
fatcat:uktquem36bduvcfiio56aa5otm
Leukocyte Tracking Database, a collection of immune cell tracks from intravital 2-photon microscopy videos
2018
Scientific Data
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Recent advances in intravital video microscopy have allowed the visualization of leukocyte behavior in vivo, revealing unprecedented spatiotemporal dynamics of immune cell interaction. ...
Lastly, LTDB represents a step towards the unravelling of biological mechanisms by video data mining in systems biology. ...
IRB imaging facility for microscopy assistance, Tommaso Virgilio, Irene Latino, Ilaria Pierangeli, Ilaria Arini and Radu Theodorescu for help during manual tracking. ...
doi:10.1038/sdata.2018.129
pmid:30015806
pmcid:PMC6049032
fatcat:xdsimddp6zbfjnjlwmkktc363e
Introduction to the special issue on data mining for health informatics
2007
SIGKDD Explorations
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Although bioinformatics has received tremendous interest from data mining researchers, data mining for health informatics is relatively new for data mining community. ...
To promote real problems and challenges in health informatics to data mining community, we organized this special issue. The call-for-papers of this special issue received much attention. ...
Last but not least, the fourth paper "Automatic in vivo microscopy video mining for leukocytes" by Chengcui Zhang, Wei-Bang Chen, Lin Yang, and Xin Chen provides an interesting example of applying video ...
doi:10.1145/1294301.1294305
fatcat:qhc4op5i3zcq7ddnjy6ptox5te
A study on video data mining
2012
International Journal of Multimedia Information Retrieval
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Compared to the mining of other types of data, video data mining is still in its infancy. There are many challenging research problems existing with video mining. ...
Beginning with an overview of the video datamining literature, this paper concludes with the applications of video mining. ...
Video mining of vivo microscopy video sequences is very difficult because of severe noises, background movements, leukocytes deformations, and contrast changes. ...
doi:10.1007/s13735-012-0016-2
fatcat:xuuf3w3b2rfcxlyevzndz6v62e
Live cell imaging to understand monocyte, macrophage, and dendritic cell function in atherosclerosis
2016
Journal of Experimental Medicine
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Intravital imaging is an invaluable tool for understanding the function of cells in healthy and diseased tissues. ...
This review will cover the benefits and limitations of various techniques for labeling and imaging myeloid cells, with a special focus on imaging cells in atherosclerotic arteries. ...
Direct viewing of atherosclerosis in vivo: plaque invasion by leukocytes is initiated by the endothelial selectins. ...
doi:10.1084/jem.20151885
pmid:27270892
pmcid:PMC4925021
fatcat:pss25ms7ibgdxnyirz6d2oble4
Live cell imaging to understand monocyte, macrophage, and dendritic cell function in atherosclerosis
2016
Journal of Cell Biology
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Direct viewing of atherosclerosis in vivo: plaque invasion by leukocytes is initiated by the endothelial selectins. ...
Importance of primary capture and Lselectindependent secondary capture in leukocyte accumulation in inflammation and atherosclerosis in vivo. J. Exp. ...
doi:10.1083/jcb.2136oia120
fatcat:ytjncyr7afhfvepyh73wcpc4hu
Insulin resistance in vascular endothelial cells promotes intestinal tumour formation
2017
Oncogene
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Strikingly, these mice had 42% more intestinal tumors than Users may view, print, copy, and download text and data-mine the content in such documents, for the purposes of academic research, subject always ...
Because hyperinsulinemia itself is an independent risk factor for cancer development, we examined tissuespecific insulin action in intestinal tumor formation. ...
Measurement of plasma insulin and flow cytometry was done using cores in the Diabetes Research Center, supported by NIH grant 5P30DK036836, at Joslin Diabetes Center. ...
doi:10.1038/onc.2017.107
pmid:28459466
pmcid:PMC5578899
fatcat:afh7rlmda5hkfbvpboctri5chm
Automating Snakes for Multiple Objects Detection
[chapter]
2011
Lecture Notes in Computer Science
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Extensive ex-16 periments have been carried out on two datasets: one has importance in 17 oil sand mining industry and the other one is significant in bio-medical 18 engineering. ...
Here, we present a novel technique to 8 automate snake/active contour for multiple objects detection. ...
To measure and analyze the rolling velocity 262 of leukocyte from the in vivo experiments, video recordings of the postcapilary 263 vennule of a cremaster muscle are made through a CCD camera coupled with ...
doi:10.1007/978-3-642-19318-7_4
fatcat:sndlfgw3dvhfza2sfbhgfnvzty
ICIP 2001 - IEEE International Conference on Image Processing
2001
Proceedings 2001 International Conference on Image Processing (Cat No 01CH37205) ICIP-01
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Schrump, National Institutes of Health, USA TRACKING LEUKOCYTES FROM IN VIVO VIDEO MICROSCOPY USING . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vol. ...
Hess, Institute for Neurobiology, Germany HIERARCHICAL ITERATIVE BAYESIAN APPROACH TO AUTOMATIC RECOGNITION .... Vol. I1 . p. 347 OF BIOLOGICAL VIRUSES IN ELECTRON MICROSCOPE IMAGES B. Matuszewski; L. ...
doi:10.1109/icip.2001.958934
fatcat:llnzif3dnvegphm4wwtm3tlhmq
Characterization of the Dynamic Behavior of Neutrophils Following Influenza Vaccination
2019
Frontiers in Immunology
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In this work, we characterized in vivo the dynamic behavior of neutrophils in the mouse popliteal lymph node (PLN) after influenza vaccination with UV-inactivated virus. ...
swarms in the subcapsular sinus of the PLN, which were associated with macrophages in this compartment. ...
Mariagrazia Uguccioni and Marcus Thelen for critical discussion of the manuscript. ...
doi:10.3389/fimmu.2019.02621
pmid:31824481
pmcid:PMC6881817
fatcat:fl43agg3fbcsnntgyqrl3f2i2a
Automated Processing of Zebrafish Imaging Data: A Survey
2013
Zebrafish
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Due to the relative transparency of its embryos and larvae, the zebrafish is an ideal model organism for bioimaging approaches in vertebrates. ...
Here, we describe the current state of the art in computational image analysis in the zebrafish system. ...
Acknowledgments The authors acknowledge all participants of the Satellite Workshop ''Future image processing platforms'' of the 2nd European Zebrafish Principal Investigator Meeting in Karlsruhe, 108 ...
doi:10.1089/zeb.2013.0886
pmid:23758125
pmcid:PMC3760023
fatcat:k23sufo6dbdpjj6mqaflrfxbni
Conceival, a novel noncontraceptive vaginal vehicle for lipophilic microbicides
2005
AAPS PharmSciTech
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Conceival was evaluated in vivo in the New Zealand white rabbit model for the preservation of sperm function based on pregnancy outcome and the potential for vaginal irritation following single and multiple ...
Three representative poorly water-soluble novel broad-spectrum anti-HIV microbicides, PHI-113, PHI-346, and PHI-443, were evaluated in 11 different solvent systems. ...
ACKNOWLEDGMENTS This work was supported in part by National Institutes of Health grants HD037357, HD042884, HD042889, HD043683, and AI054352 to Osmond J. DÕCruz. ...
doi:10.1208/pt060111
pmid:16353964
pmcid:PMC2750412
fatcat:wv65sv735bbbnbw3v4hpemnipm
Enhanced adhesion of blood platelets to intact endothelium of mesenteric vascular bed in mice with streptozotocin-induced diabetes is mediated by an up-regulated endothelial surface deposition of VWF – In vivo study
2017
Platelets
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However, there is still no direct evidence for greater interaction between platelets and intact endothelium in in vivo animal models of diabetes. ...
Numerous in vitro experiments have confirmed that a dysfunctional endothelium is characterized by, inter alia, a higher affinity for binding of platelets and leukocytes. ...
Nieswandt from the Department of Experimental Biomedicine, University of Würzburg, University Hospital and Rudolf Virchow Center, Würzburg, Germany and Emfret Analytics (Eibelstadt, Germany) for the kind ...
doi:10.1080/09537104.2017.1332365
pmid:28745543
fatcat:ey765pcxhbfhrb3wo5zrlpg4fq
An Overview of Organs-on-Chips Based on Deep Learning
2022
Research
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Deep learning, an emerging area of research in the field of machine learning, can automatically mine the inherent characteristics and laws of "big data" and has achieved remarkable applications in computer ...
The integration of deep learning in OoCs is an emerging field that holds enormous potential for drug development, disease modeling, and personalized medicine. ...
However, reducing the huge cost of manual labeling and automatically mining and refining the inherent characteristics of massive data are key challenges that urgently need to be overcome. ...
doi:10.34133/2022/9869518
pmid:35136860
pmcid:PMC8795883
fatcat:hjh27q2igbhmfjez2gymh6ohqi
Methodical Approaches of Image Analysis on Malarial Parasites Identification and Categorization in Thick Blood Smears-A Review
2018
Journal of excellence in Computer Science and Engineering
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Real time in vivo optical imaging of infected cells based on automated computer vision provides possible insights about the plasmodium species that could be applied to treat and prevent malaria. ...
Although the world has succeeded in finding out the devices that detect and classify the malaria parasites well in thin blood films, technology still lacks sufficient innovation in identifying and classifying ...
[106] Segmentation is a common procedure for any diseases. [107] supports computer aided automatic tools for segmentation. ...
doi:10.18831/djcse.in/2018021002
fatcat:da7jrrjfcnez3o6st54amkeyrm
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