Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
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Mar 20, 2024 - R
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copy-number
Here are 17 public repositories matching this topic...
Copy number calling and variant classification using targeted short read sequencing
copy-number bioconductor-package cell-free-dna tumor-purity tumor-heterogeneity tumor-mutational-burden loh
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Feb 19, 2026 - R
Lifterover copy number segments in whole
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Feb 6, 2024 - Python
High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants
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Mar 27, 2020 - R
Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data.
somatic-variants cancer-genomics expectation-maximization gaussian-mixture-models maximum-likelihood-estimation copy-number bayesian-information-criterion auto-correlation
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Mar 6, 2024 - C++
🔬 R package: Analysis of Large Affymetrix Microarray Data Sets
package r analysis hpc notebook dna expression microarray rna reproducibility large-scale affymetrix copy-number
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Dec 14, 2025 - R
Probabilistic inference of somatic copy number alterations using repeat DNA (FAST-SeqS)
r genomics bayesian-methods bayesian-inference mcmc probabilistic-graphical-models copy-number-variation rcpparmadillo bayesian-nonparametric-models probabilistic-models copy-number
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Oct 13, 2018 - C++
Software for Rapid Analyses of Human Copy Number Data
bioinformatics genomics genome copy-number-variation genotype karyotype copy-number x-chromosome y-chromosome autosome
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Aug 14, 2025 - C++
R package: Parent-specific Copy-number Estimation Pipeline using HT-Seq Data
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Feb 20, 2021 - R
CNprep Package - Pre-process DNA Copy Number (CN) Data for Detection of CN Events
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May 19, 2022 - R
KILDA (KIv2 Length Determined from a kmer Analysis) provides an alignment-free estimation of the number of KIV2 (Kringle IV type 2) repeats from FASTQ files.
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Dec 2, 2025 - Python
Processing DNA Copy Number (CN) Data for Detection of CN Events
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May 18, 2022 - R
Copy number variation detection from WGS/WES using CNVkit
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May 9, 2026
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