Abstract
Nonlinear mixed-effects models are very useful to analyze repeated measures data and are used in a variety of applications. Normal distributions for random effects and residual errors are usually assumed, but such assumptions make inferences vulnerable to the presence of outliers. In this work, we introduce an extension of a normal nonlinear mixed-effects model considering a subclass of elliptical contoured distributions for both random effects and residual errors. This elliptical subclass, the scale mixtures of normal (SMN) distributions, includes heavy-tailed multivariate distributions, such as Student-t, the contaminated normal and slash, among others, and represents an interesting alternative to outliers accommodation maintaining the elegance and simplicity of the maximum likelihood theory. We propose an exact estimation procedure to obtain the maximum likelihood estimates of the fixed-effects and variance components, using a stochastic approximation of the EM algorithm. We compare the performance of the normal and the SMN models with two real data sets.
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References
Andrews, D.F., Mallows, C.L.: Scale mixtures of normal distributions. J. R. Stat. Soc. Ser. B 36, 99–102 (1974)
Beal, S.L., Sheiner, L.B.: NONMEN User’s Guide. Nonlinear Mixed-Effects Models for Repeated Measures Data. University of California, San Francisco (1992)
Branco, M.D., Dey, D.K.: A general class of multivariate skew-elliptical distributions. J. Multivar. Anal. 79, 99–113 (2001)
Cai, L.: High-dimensional exploratory item factor analysis by a Metropolis-Hastings Robbins-Monro algorithm. Psychometrika 75, 33–57 (2010)
Choy, S.T.B., Smith, A.F.M.: Hierarchical models with scale mixtures of normal distributions. Test 6, 205–221 (1997)
Cook, R.D.: Assessment of local influence (with discussion). J. R. Stat. Soc. Ser. B 48, 133–169 (1986)
Cook, R.D.: Local Influence. In: Kotz, S., Read, C.B., Banks, D.L. (eds.) Encyclopedia of Statistical Sciences, Update, vol. 1, pp. 380–385. Wiley, New York (1997)
Cook, R.D., Weisberg, S.: Residuals and Influence in Regression. Chapman & Hall, London (1982)
Copt, S., Victoria-Feser, M.: High breakdown inference in the mixed linear model. J. Am. Stat. Assoc. 101, 292–300 (2006)
Davidian, M., Giltinan, D.M.: Nonlinear Models for Repeated Measurements Data. Chapman & Hall, New York (1995)
Davidian, M., Giltinan, D.M.: Nonlinear models for repeated measurements: An overview and update. J. Agric. Biol. Environ. Stat. 8, 387–419 (2003)
De la Cruz, R.: Bayesian non-linear regression models with skew-elliptical errors: Applications to the classification of longitudinal profiles. Comput. Stat. Data Anal. 53, 436–229 (2008)
De la Cruz, R., Branco, M.D.: Bayesian analysis for nonlinear regression model under skewed errors, with application in growth curves. Biometric. J. 51(4), 588609 (2009)
Demidenko, E.: Mixed Models: Theory and Applications. Wiley, New York (2004)
Delyon, B., Lavielle, M., Moulines, E.: Convergence of a stochastic approximation version of the EM algorithm. Ann. Stat. 27, 94–128 (1999)
Dempster, A.P., Laird, N.M., Rubin, D.B.: Maximum likelihood from incomplete data via the EM algorithm (with discussion). J. R. Stat. Soc. Ser. B 39, 1–38 (1977)
Fernández, C., Steel, M.F.J.: Multivariate Student-t regression models: pitfalls and inference. Biometrika 86, 153–167 (1999)
Gu, M.G., Kong, F.H.: A stochastic approximation algorithm with Markov chain Monte-Carlo method for incomplete data estimation problems. Proc. Natl. Acad. Sci. USA 95, 7270–7274 (1998)
Jank, W.: Implementing and diagnosing the stochastic approximation EM algorithm. J. Comput. Graph. Stat. 15, 803–829 (2006)
Jamshidian, M.: Adaptive robust regression by using a nonlinear regression program. J. Stat. Softw. http://www.jstatsoft.org/v04/i06 (1999)
Jara, A., Quintana, F., San Martin, E.: Linear mixed models with skew-elliptical distributions: A Bayesian approach. Comput. Stat. Data Anal. 52, 5033–5045 (2008)
Johansen, S.: Functional Relations, Random Coefficients, and Nonlinear Regression with Application to Kinectic Data. Springer, New York (1984)
Kent, J.T., Tyler, D.E., Vardi, Y.: A curious likelihood identity for the multivariate t distribution. Commun. Stat. Simul. C. 23, 441–453 (1994)
Kuhn, E., Lavielle, M.: Coupling a stochastic approximation version of EM with a MCMC procedure. ESAIM P&S 8, 115–131 (2004)
Kuhn, E., Lavielle, M.: Maximum likelihood estimation in nonlinear mixed effects models. Comput. Stat. Data Anal. 49, 1020–1038 (2005)
Lange, K., Sinsheimer, J.: Normal/independent distributions and their applications in robust regression. J. Comput. Graph. Stat. 2, 175–198 (1993)
Lange, K.L., Little, R.J.A., Taylor, J.M.G.: Robust statistical modeling using the t distribution. J. Am. Stat. Assoc. 84, 881–896 (1989)
Lavielle, M.: Monolix User Guide Manual. http://www.monolix.org (2005)
Lavielle, M., Meza, C.: A parameter expansion version of the SAEM algorithm. Stat. Comput. 17, 121–130 (2007)
Lee, S., Xu, L.: Influence analyses of nonlinear mixed-effects models. Comput. Stat. Data Anal. 45, 321–341 (2004)
Lin, T.I.: Longitudinal data analysis using t linear mixed models with autoregressive dependence structures. J. Data Sci. 6, 333–355 (2008)
Lin, T.I., Lee, J.C.: A robust approach to t linear mixed models applied to multiple sclerosis data. Stat. Med. 25, 1397–1412 (2006)
Lin, T.I., Lee, J.C.: Estimation and prediction in linear mixed models with skew-normal random effects for longitudinal data. Stat. Med. 27, 1490–1507 (2007)
Lindstrom, M.J., Bates, D.M.: Nonlinear mixed-effects models for repeated measures data. Biometrics 46, 673–787 (1990)
Liu, C.: Bayesian robust multivariate linear regression with incomplete data. J. Am. Stat. Assoc. 91, 1219–1227 (1996)
Liu, C., Rubin, D., Wu, Y.: Parameter expansion to accelerate EM: The PX-EM algorithm. Biometrika 85, 755–770 (1998)
Louis, T.A.: Finding the observed information matrix when using the EM algorithm. J. R. Stat. Soc. Ser. B 44, 226–233 (1982)
Lucas, A.: Robustness of the Student t based-M-estimator. Commun. Stat. Theor. M 26, 1165–1182 (1997)
McCulloch, C.E.: Maximum likelihood algorithms for generalized linear mixed models. J. Am. Stat. Assoc. 92, 162–170 (1997)
Meng, X.L., van Dyk, D.A.: The EM algorithm—an old folk song sung to a fast new tune (with discussion). J. R. Stat. Soc. Ser. B 59, 511–567 (1997)
Meza, C., Jaffrézic, F., Foulley, J.-L.: REML estimation of variance parameters in nonlinear mixed effects models using SAEM algorithm. Biometric. J. 49, 876–888 (2007)
Meza, C., Jaffrézic, F., Foulley, J.-L.: Estimation in the probit normal model for binary outcomes using the SAEM algorithm. Comput. Stat. Data Anal. 53, 1350–1360 (2009)
Osorio, F., Paula, G.A., Galea, M.: Assessment of local influence in elliptical linear models with longitudinal structure. Comput. Stat. Data Anal. 51, 4354–4368 (2007)
Philippe, A.: Simulation of right and left truncated gamma distributions by mixtures. Stat. Comput. 7, 173–181 (1997)
Pinheiro, J., Bates, D.M.: Approximations to the log-likelihood function in the nonlinear mixed-effects model. J. Comput. Graph. Stat. 4, 12–35 (1995)
Pinheiro, J., Bates, D.M.: Mixed-Effects Models in S and S-PLUS. Springer, New York (2000)
Pinheiro, J., Liu, C., Wu, Y.: Efficient algorithms for robust estimation in linear mixed-effects models using the multivariate t distribution. J. Comput. Graph. Stat. 10, 249–276 (2001)
Roberts, G.O., Rosenthal, J.S.: Optimal scaling of various metropolis-hastings algorithms. Stat. Sci. 16, 351–367 (2001)
Roberts, G.O., Gelman, A., Gilks, W.: Weak convergence and optimal scaling of random walk metropolis algorithm. Ann. Appl. Prob. 7, 110–120 (1997)
Rogers, W.H., Tuckey, J.W.: Understanding some long-tailed distributions. Stat. Neerl. 26, 211–226 (1972)
Rosa, G.J.M., Padovani, C.R., Gianola, D.: Robust linear mixed models with Normal/Independent distributions and Bayesian MCMC implementation. Biometric. J. 45, 573–590 (2003)
Rosa, G.J.M., Gianola, D., Padovani, C.R.: Bayesian longitudinal data analysis with mixed models and thick-tailed distributions using MCMC. J. Appl. Stat. 31, 855–873 (2004)
Russo, C.M., Paula, G.A., Aoki, R.: Influence diagnostics in nonlinear mixed-effects elliptical models. Comput. Stat. Data Anal. 53, 4143–4156 (2009)
Shi, L., Chen, G.: Detection of outliers in multilevel models. J. Stat. Plan. Inference 138, 3189–3199 (2008)
Staudenmayer, J., Lake, E.E., Wand, M.P.: Robustness for general design mixed models using the t-distribution. Stat. Model. 9, 235–255 (2009)
Spiegelhalter, D.J., Thomas, A., Best, N.G.: Winbugs version 1.2 user manual. MRC Biostatistics Unit (1999)
Vaida, F.: Parameter convergence for EM and MM algorithms. Stat. Sin. 15, 831–840 (2005)
Vonesh, E.F.: A note on the use of Laplace’s approximation for nonlinear mixed-effects models. Biometrika 83, 447–452 (1996)
Vonesh, E.F., Chinchilli, V.M.: Linear and Nonlinear Models for the Analysis of Repeated Measurements. Marcel Dekker, New York (1997)
Walker, S.: An EM algorithm for nonlinear random effects models. Biometrics 52, 934–944 (1996)
Wang, J.: EM algorithms for nonlinear mixed effects models. Comput. Stat. Data Anal. 51, 3244–3256 (2007)
Wei, B., Shih, J.: On statistical models for regression diagnostics. Ann. Inst. Stat. Math. 46, 267–278 (1994)
Wei, G., Tanner, M.: A Monte Carlo implementation of the EM algorithm and the poor man’s data augmentation algorithms. J. Am. Stat. Assoc. 85, 699–704 (1990)
Wei, W.H., Fung, W.K.: The mean-shift outlier model in general weighted regression and its applications. Comput. Stat. Data Anal. 30, 429–441 (1999)
Welsh, A.H., Richardson, A.M.: Approaches to the robust estimation of mixed models. In: Maddala, G.S., Rao, C.R. (eds.) Handbook of Statistics, vol. 15, pp. 343–384. Elsevier Science, Amsterdam (1997)
Wolfinger, R.: Laplace’s approximation for nonlinear mixed models. Biometrika 80, 791–795 (1993)
Wolfinger, R.D., Lin, X.: Two Taylor-series approximation methods for nonlinear mixed models. Comput. Stat. Data Anal. 25, 465490 (1997)
Wu, C.-F.J.: On the convergence properties of the EM algorithm. Ann. Stat. 11, 95–103 (1983)
Yeap, B.Y., Davidian, M.: Robust two-stage estimation in hierarchical nonlinear models. Biometrics 57, 266–272 (2001)
Yeap, B.Y., Catalano, P.J., Ryan, L.M., Davidian, M.: Robust two stage approach to repeated measurements analysis of chronic ozone exposure in rats. J. Agric. Biol. Environ. Stat. 8, 438–454 (2003)
Zhu, H., Lee, S.: Analysis of generalized linear mixed models via a stochastic approximation algorithm with Markov chain Monte-Carlo method. Stat. Comput. 12, 175–183 (2002)
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Meza, C., Osorio, F. & De la Cruz, R. Estimation in nonlinear mixed-effects models using heavy-tailed distributions. Stat Comput 22, 121–139 (2012). https://doi.org/10.1007/s11222-010-9212-1
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DOI: https://doi.org/10.1007/s11222-010-9212-1