A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
Filters
The Global Genome Biodiversity Network (GGBN) Data Standard specification
2016
Database: The Journal of Biological Databases and Curation
Preserved Fulltext
In order to facilitate exchange of information on genomic samples and their derived data, the Global Genome Biodiversity Network (GGBN) Data Standard is intended to provide a platform based on a documented ...
The GGBN Data Standard will reveal and democratize the hidden contents of biodiversity biobanks, for the convenience of everyone in the wider biobanking community. ...
Acknowledgements The authors thank the European Commission, the German Research Foundation (DFG), and the National Museum of Natural History (Smithsonian Institution) Global Genome Initiative for funding ...
doi:10.1093/database/baw125
pmid:27694206
pmcid:PMC5045859
fatcat:pn7r7wk5pzejbh7xznqf3j3gnq
The Global Genome Biodiversity Network (GGBN) Data Portal
2013
Nucleic Acids Research
Preserved Fulltext
The Internet Archive has a preservation copy of this work in our general collections.
The file type is application/pdf.
The Global Genome Biodiversity Network (GGBN) was formed in 2011 with the principal aim of making high-quality well-documented and vouchered collections that store DNA or tissue samples of biodiversity ...
This is achieved through the GGBN Data Portal (http://data.ggbn.org), which links globally distributed databases and bridges the gap between biodiversity repositories, sequence databases and research results ...
Consortium for Understanding and Sustaining a Biodiverse Planet. ...
doi:10.1093/nar/gkt928
pmid:24137012
pmcid:PMC3965106
fatcat:dr6fltjpx5crbjwzufdfi6rmm4
Environmental samples, eDNA and HTS libraries – data standard proposals from the Global Genome Biodiversity Network (GGBN)
2017
Biodiversity Information Science and Standards
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2018; you can also visit the original URL.
The file type is application/pdf.
Here we present our ideas and a prototype for eDNA samples and HTS libraries based on the GGBN Data Standard (Droege et al. 2016) . ...
Optimally, HTS library metadata will include specific standardized keywords (by e.g. organism, HTS method etc.). ...
Abstract The GGBN Data Portal (http://www.ggbn.org, Droege et al. 2014 ) has established standardised data flows for genomic DNA samples, including voucher specimens, tissue samples, DNA samples as well ...
doi:10.3897/tdwgproceedings.1.20483
fatcat:tadrucmvijfwlnt7sc3r7n6ocq
Global Genome Biodiversity Network: saving a blueprint of the Tree of Life – a botanical perspective
2016
Annals of Botany
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
Scope The Global Genome Biodiversity Network (GGBN) was created to fill this vacuum by establishing a onestop access point for locating samples meeting quality standards for genome-scale applications, ...
Increased accessibility to genomic samples will further genomic research and development, conserve genetic resources, help train the next generation of genome researchers and raise the visibility of biodiversity ...
the GGBN Data Portal, as well as Markus Döring and Tim Robertson (Global Biodiversity Information Facility, GBIF) for their technical support with the IPT (Integrated Publishing Toolkit). ...
doi:10.1093/aob/mcw121
pmid:27328683
pmcid:PMC4998982
fatcat:4zcmnpv3wbadjjd47hk6df54om
Luomus' Genomic Resources Collection Available as Open Data Through FinBIF
2019
Biodiversity Information Science and Standards
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2020; you can also visit the original URL.
The file type is application/pdf.
Genome Biodiversity Network (GGBN; http://www.ggbn.org/ggbn_portal/) and established a Genomic Resources Collection (GRC) in 2018. ...
The GRC collection follows the best practices of the Global Genome Biodiversity Network (GGBN) concerning long-term storage and physical quality of samples, and international agreements (the Convention ...
Acknowledgements FMNH Luomus Genomic Resources Collection is part of the Helsinki Institute of Life Science (HiLIFE) research infrastructure network, and has been partially developed by HiLIFE infrastructure ...
doi:10.3897/biss.3.37024
fatcat:vqiou5tzuvcxnbow6nmdzkoknu
PlutoF: Biodiversity data management platform for the complete data lifecycle
2019
Biodiversity Information Science and Standards
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2020; you can also visit the original URL.
The file type is application/pdf.
Examples include Darwin Core, GGBN (Global Genome Biodiversity Network), EML (Ecological Metadata Language), MCL (Microbiological Common Language), and MIxS (Minimum Information about any (x) Sequence) ...
Another option is to publish observation or collection datasets via the GBIF (Global Biodiversity Information Facility) portal. ...
Examples include Darwin Core, GGBN (Global Genome Biodiversity Network), EML (Ecological Metadata Language), MCL (Microbiological Common Language), and MIxS (Minimum Information about any (x) Sequence) ...
doi:10.3897/biss.3.37398
fatcat:qasjt4omfzac3cedomvr5i6xra
B-HIT - A Tool for Harvesting and Indexing Biodiversity Data
2015
PLoS ONE
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2017; you can also visit the original URL.
The file type is application/pdf.
biodiversity data infrastructures. ...
The Global Biodiversity Information Facility (GBIF) implemented a Harvesting and Indexing Toolkit (HIT), which largely automates data harvesting activities for hundreds of collection and observational ...
Acknowledgments The authors thank all BiNHum and GGBN partners for their feedback that helped to improve the software. ...
doi:10.1371/journal.pone.0142240
pmid:26544980
pmcid:PMC4636251
fatcat:ez7wjbnerffn7i74lk5nsmwyjm
"Life in Data"—Outcome of a Multi-Disciplinary, Interactive Biobanking Conference Session on Sample Data
2016
Biopreservation and Biobanking
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2020; you can also visit the original URL.
The file type is application/pdf.
Clinical, biodiversity, and environmental biobanks share many data standards, but there is a lack of harmonization on how data are defined and used among biobank fields. ...
The votes revealed the need to: (a) educate biobanks in the use of data management tools and standards, and (b) encourage a more cohesive approach for how data and samples are tracked, exchanged, and standardized ...
Science Working Group; and GGBN. ...
doi:10.1089/bio.2015.0061
pmid:26808538
pmcid:PMC4761830
fatcat:rxqqjbvpqragndkkp66bymmtle
Strengthening the global network for sharing of marine biological collections: recommendations for a new agreement for biodiversity beyond national jurisdiction
2020
ICES Journal of Marine Science
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2020; you can also visit the original URL.
The file type is application/pdf.
Despite their key importance, sample collections and the institutes that house them are often underfunded and receive comparatively little attention in the discussions associated with global biodiversity ...
With negotiations underway for a new implementing agreement on biodiversity beyond national jurisdiction, marine genetic resources (MGR), including questions on the sharing of benefits, remains the most ...
Acknowledgements We thank the Deep Ocean Stewardship Initiative (DOSI) and the JM Kaplan Fund for supporting open access publication of this manuscript. ...
doi:10.1093/icesjms/fsaa227
pmid:33814897
pmcid:PMC7988798
fatcat:izz2rgtfnzadzgjznvh3z7qxhq
A Workflow to Preserve Genome-Quality Tissue Samples From Plants in Botanical Gardens and Arboreta
2016
Applications in Plant Sciences
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
Three photographs are typically taken, including (1) the specimen tag within the living collection that includes reference data for tracking provenance, (2) a photo of the specimen habit in the context ...
The most important resources for sampling voucher specimens from a living collection are experience, time, and the proper tools. ...
To accommodate this need, the Global Genome Biodiversity Network (GGBN; Seberg et al., 2016) was founded as a consortium of biorepositories to facilitate the storage of genomequality tissues for natural ...
doi:10.3732/apps.1600039
pmid:27672517
pmcid:PMC5033361
fatcat:q56qoizxw5gzrhqnbojfz3flpm
Clarifying Concepts and Terms in Biodiversity Informatics
2013
Standards in Genomic Sciences
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2017; you can also visit the original URL.
The file type is application/pdf.
If names be not correct, language is not in accordance with the truth of things. If language be not in accordance with the truth of things, affairs cannot be carried on to success." ...
The DNA Bank Network is one of the founders of the Global Genome Biodiversity Network (GGBN) [21] and will host and coordinate the GGBN's planned data portal. ...
In addition, the ABCDDNA data model has gaps relative to the needs of GGBN partners. ...
doi:10.4056/sigs.3907833
pmid:23991264
pmcid:PMC3746421
fatcat:xzn7oivs2bcojc7t4ozdg6gp24
Permits, contracts and their terms for biodiversity specimens
2024
Research Ideas and Outcomes
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2024; you can also visit the original URL.
The file type is application/pdf.
of Legal/Contractual Terms for Biodiversity Specimens categorises the terms within permits and contracts. ...
The implementation in the DiSSCo data model is outlined and a concrete use case is presented to show how conditions, e.g. the Typology of Legal/Contractual Terms, can be introduced into the DiSSCo Electronic ...
We further want to thank
• Andreas Planck for creating dedicated pages on the GGBN Wiki platform and importing the Permit/Contract Typology and the Typology of Legal/Contractual Terms for Biodiversity ...
doi:10.3897/rio.10.e114366
fatcat:kesy7trrirauzoswhz4ng6k5ou
Access to Marine Genetic Resources (MGR): Raising Awareness of Best-Practice Through a New Agreement for Biodiversity Beyond National Jurisdiction (BBNJ)
2019
Frontiers in Marine Science
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2020; you can also visit the original URL.
The file type is application/pdf.
biodiversity beyond national jurisdiction (BBNJ) process. ...
Access to MGR From ABNJ cruises; and lastly development of a clearing house to further centralised access to the above. ...
at the NHM Molecular Collections Facility, and Chiho Ikebe (NHM) for support in curation of the UK-1 benthic macrofauna collections at the NHM, the attendees of the Senkenberg 'Deep-Sea taxonomy under ...
doi:10.3389/fmars.2019.00520
fatcat:kl6usrklnrfalm5yxugcumkdsq
Meeting Report: GBIF hackathon-workshop on Darwin Core and sample data (22-24 May 2013)
2014
Standards in Genomic Sciences
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2017; you can also visit the original URL.
The file type is application/pdf.
Acknowledgements We gratefully acknowledge support from the Global Biodiversity Information Facility (GBIF), from the Global Genome Biodiversity Network (GGBN), from the EU 7FP Biodiversity, Bioinformatics ...
, Biotechnology project (Micro B3), and from the US National Science ...
Taking into consideration earlier discussions between Darwin Core and the Global Genome Biodiversity Network (GGBN) [49] and DNA Bank Network [50] during the Biodiversity Information Standards (BIS TDWG ...
doi:10.4056/sigs.4898640
fatcat:l7lxdkdhrvf7hajyityxguws6u
Earth BioGenome Project: Sequencing life for the future of life
2018
Proceedings of the National Academy of Sciences of the United States of America
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
The far-reaching potential benefits of creating an open digital repository of genomic information for life on Earth can be realized only by a coordinated international effort. biodiversity | genome sequencing ...
Herein, we present a perspective on the Earth BioGenome Project (EBP), a moonshot for biology that aims to sequence, catalog, and characterize the genomes of all of Earth's eukaryotic biodiversity over ...
for providing data on GGBN and Brazilian biodiversity, David Stern for help in quantifying genome data across the tree of life and the development of Fig. 1 , Mirhee Lee for Fig. 2 , Nicholas Vasi for ...
doi:10.1073/pnas.1720115115
pmid:29686065
fatcat:db4dlyare5d73n744z62ttusaa
« Previous
Showing results 1 — 15 out of 91 results