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Multicore SIMD ASIP for Next-Generation Sequencing and Alignment Biochip Platforms

Nuno Neves, Nuno Sebastiao, David Matos, Pedro Tomas, Paulo Flores, Nuno Roma
2015 IEEE Transactions on Very Large Scale Integration (vlsi) Systems  
Targeting the development of new biochip platforms capable of autonomously sequencing and aligning biological sequences, a new multicore processing structure is proposed in this manuscript.  ...  Index Terms-Application-specific instruction-set architecture, biochip platforms, biological sequences alignment, multicore architecture, single-instruction-multiple-data (SIMD). 1063-8210  ...  Due to the high-performance and low-energy constraints of the considered biochip platform, mainly targeted for portable and autonomous biological sequence alignment of next-generation sequencing (NGS)  ... 
doi:10.1109/tvlsi.2014.2333757 fatcat:twsa7irxnjhkxl3mhqktxdsb4e