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Comparing a rule-based versus statistical system for automatic categorization of MEDLINE documents according to biomedical specialty
2009
Journal of the American Society for Information Science and Technology
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We evaluate and compare the performance of these systems against a gold standard of humanly assigned categories for one hundred MEDLINE documents, using six measures selected from trec_eval. ...
This paper focuses on automatic categorization of documents from the biomedical literature into broad discipline-based categories. ...
Darmoni to the to the Lister Hill Center Visitors Program, sponsored by the National Library of Medicine and administered by the Oak Ridge Institute for Science and Education. ...
doi:10.1002/asi.21170
pmid:19956557
pmcid:PMC2782854
fatcat:plvb4imuwjfr5fjrtjuqenea7m
Supporting E-Health Information Seekers: From Simple Strategies to Knowledge-Based Methods
[chapter]
2012
eHealth and Remote Monitoring
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The MeSH thesaurus was originally used to index biomedical scientific articles for the MEDLINE database. ...
To obtain more precise rules we performed experiments on categorized documents according to groups of users: students in medicine, health professionals, and general public to evaluate the influence of ...
doi:10.5772/50348
fatcat:xd2g7yxqerd7rdvygeom2opljq
Biomedical question answering: A survey
2010
Computer Methods and Programs in Biomedicine
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Conclusion: Corresponding to the growth of biomedical information, there is a growing need for QA systems that can help users better utilize the ever-accumulating information. ...
Based on the framework, we first conducted a survey of open-domain or non-biomedical-domain QA approaches that belong to each of the three subcategories. ...
Acknowledgement We would like to thank the anonymous reviewers for their helpful feedback. r e f e r e n c e s ...
doi:10.1016/j.cmpb.2009.10.003
pmid:19913938
fatcat:tv4sel4llbcnjppnn7g2tygqze
Collecting specialty-related medical terms: Development and evaluation of a resource for Spanish
2021
BMC Medical Informatics and Decision Making
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Conclusion The creation and validation of SCOVACLIS support the hypothesis that specific term sets reduce the level of ambiguity when compared to a specialty-independent and broad-scope vocabulary. ...
However, most of them are unambiguous within text limited to a given clinical specialty. This is one rationale besides others to classify clinical text by the clinical specialty to which they belong. ...
The number of required texts may vary according to the diversity of terms for each specialty; however, a minimum amount of texts is desirable. ...
doi:10.1186/s12911-021-01495-w
pmid:33947365
pmcid:PMC8094531
fatcat:sckaqdycc5henmwj3fzurv2gai
Summarization from medical documents: a survey
2005
Artificial Intelligence in Medicine
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Objective: The aim of this paper is to survey the recent work in medical documents summarization. ...
Discussion and conclusions: The paper discusses thoroughly the promising paths for future research in medical documents summarization. ...
Many thanks also to Ms. Eleni Kapelou and Ms. Irene Doura for checking the use of English. ...
doi:10.1016/j.artmed.2004.07.017
pmid:15811783
fatcat:n7u6ji5t2rgkvjktacjf4rdire
How to Choose a Journal: Scientific and Practical Considerations
[chapter]
2017
Publishing Addiction Science: A Guide for the Perplexed
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ranking, evaluating, categorizing, and comparing journals; Garfield, 1994) . ...
In the remainder of this chapter, we discuss the merits of publishing in addiction specialty journals, which offer a range of opportunities to prospective authors that are comparable to those available ...
doi:10.5334/bbd.c
fatcat:3bjgxn5sfbaxfewvuhadwoypzi
Information retrieval in medicine: The electronic medical record as a new domain
2007
Proceedings of the American Society for Information Science and Technology
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The medical record is a material form of public memory," Berg (1996) writes, "a structured distributing and collecting device, where all tasks concerning a patient's trajectory must begin and end..." ...
Unfortunately, of the 130 articles published about medicine in almost 36 years of JASIST, although 70 (54%) deal with information retrieval, communication and the work processes behind them, only 2 of ...
"An Experimental Study in Automatically Categorizing Medical Documents", presented a study of automatic classification using the International Code of Diseases (Ribeiro-Neto, Laender, & de Lima, 2001) ...
doi:10.1002/meet.1450430190
fatcat:5fcnsaceujeqhbd2nfx2yovn5i
Large expert-curated database for benchmarking document similarity detection in biomedical literature search
2019
Database: The Journal of Biological Databases and Curation
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Document recommendation systems for locating relevant literature have mostly relied on methods developed a decade ago. ...
This is largely due to the lack of a large offline gold-standard benchmark of relevant documents that cover a variety of research fields such that newly developed literature search techniques can be compared ...
Campana 28 , Nicholas A. Kurniawan 29 , David Lalaouna 30 , Felix J. Hüttner 31 , Brooke A. Ammerman 32 , Felix Ehret 33 , Paul A. ...
doi:10.1093/database/baz085
pmid:33326193
pmcid:PMC7291946
fatcat:floik5bx6bdxpnvxnl64ryqhou
A Decade of In-text Citation Analysis based on Natural Language Processing and Machine Learning Techniques: An overview of empirical studies
[article]
2020
arXiv
pre-print
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to measure the impact of scientific publications in contextual terms. ...
This has led to technical developments in citation context and content analysis, citation classifications, citation sentiment analysis, citation summarisation, and citation-based recommendation. ...
Acknowledgment The authors (Salem Alelyani and Saeed-Ul Hassan) are grateful for the financial support received from King Khalid University for this research Under Grant No. R.G.P2/100/41. ...
arXiv:2008.13020v1
fatcat:jijpqtyhhrf6nbpmzybtylseka
Vaidurya: A multiple-ontology, concept-based, context-sensitive clinical-guideline search engine
2009
Journal of Biomedical Informatics
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search, which relies on first semi-structuring the guidelines according to a given ontology, then searching for terms within specific labeled text segments. ...
We conclude by analyzing the limitations and advantages of the approach, and the steps that we have started to take to extend it based on user feedback. ...
Kumar for his contribution in the extraction rules and the assessment of the query interfaces. We also thank T. Lavie for her contribution in the HCI aspects of the query interfaces and Dr. ...
doi:10.1016/j.jbi.2008.07.003
pmid:18721900
fatcat:mpskzpizxnemtag3vepn4h3cx4
Medical expert systems--knowledge tools for physicians
1986
Western Journal of Medicine
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One experimental system, ONCOCIN, provides a glimpse of the kinds of knowledge-based tools that will someday be available to physicians. ...
Recent advances in the field of artificial intelligence have led to the emergence of expert systems, computational tools designed to capture and make available the knowledge of experts in a field. ...
In addition, only the first of the four sample rules shown allows a conclusion to be reached with certainty (a so-called categorical rule). ...
pmid:3811349
pmcid:PMC1307157
fatcat:gvea3unchndwlj4jrxopulvacq
Accuracy of PubMed-based author lists of publications and use of author identifiers to address author name ambiguity: a cross-sectional study
2021
Scientometrics
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Methods: In this Swiss study conducted in 2019, 300 hospital-based senior physicians were asked to generate a list of their publications in PubMed and complete a questionnaire (type of query used, number ...
Objective: To assess the accuracy of PubMed-based author lists of publications and use of author identifiers to address author name ambiguity. ...
Acknowledgements We would like to warmly thank all the physicians who participated in the study. Funding Open Access funding provided by Université de Genève. ...
doi:10.1007/s11192-020-03845-3
dblp:journals/scientometrics/SeboLV21a
fatcat:bqwviqlqqbglplzgogwj3qjiwy
Integration and Beyond: Linking Information from Disparate Sources and into Workflow
2000
JAMIA Journal of the American Medical Informatics Association
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A b s t r a c t The vision of integrating information-from a variety of sources, into the way people work, to improve decisions and process-is one of the cornerstones of biomedical informatics. ...
This review identified three distinct generations of "integration" projects. First-generation projects create a database and use it for multiple purposes. ...
Clinical algorithms can also automatically determine patient eligibility for guideline-based care and provide convenient Web-based forms to allow physicians to order related protocol-based medications, ...
doi:10.1136/jamia.2000.0070135
pmid:10730596
pmcid:PMC61466
fatcat:spcet2irsnahhoznv4y4gjvkrm
Towards Personalized and Human-in-the-Loop Document Summarization
[article]
2021
arXiv
pre-print
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The experimental results prove the efficiency of the proposed approaches compared to other state-of-the-art models. ...
It further intends to facilitate the analysis of documents to support personalised information extraction. ...
Another example is LetSum, a summarisation system for legal [41] and biomedical texts [42] . ...
arXiv:2108.09443v2
fatcat:245c3byhg5htrnmbnoofexzh3u
Category Definitions
[chapter]
2017
Clinical Informatics Literacy
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usually allowed only by clinicians with a medical degree (MD, DO)
Clinical Specialty A clinical specialty is a name for a particular branch of medicine. ...
Address (
Data Type The term data type is used in different scientific contexts to refer to the methods of classifying data according to the possible values for that type, the operations (e.g., statistical ...
American A business philosophy, focused on customer satisfaction that leads to a set of actions or system to manage the activities and tasks needed to maintain a desired level of consistency or even excellence ...
doi:10.1016/b978-0-12-803206-0.00001-8
fatcat:ts57p4xi2nflrpo4j5jthqov4u
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