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Sep 9, 2015 · Our goal was to explore the accuracy and utility of identifying and removing PCR duplicates from HTS data using Super Deduper.
Sep 12, 2015 · ABSTRACT. Our goal was to explore the accuracy and utility of identifying and removing PCR duplicates from HTS data using Super Deduper.
Our goal was to explore the accuracy and utility of identifying and removing PCR duplicates from HTS data using Super Deduper. Super Deduper is a ...
Jul 26, 2016 · super deduper uses a key sequence within the read and duplicate keys are expected to be PCR duplicates, your 6bp molecular barcode alone however ...
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Introducing the Super Deduper. The Super Deduper is a C/C++ application that was created to remove PCR duplicates from high throughput sequencing data.
Missing: fast detection
Jul 19, 2017 · I wrote a mapping-based deduplication program that handles duplicates in the first two scenarios, but as a result it uses a lot of memory. My ...
Missing: Super detection
Aug 17, 2014 · It deduplicates based on sequence, not mapping (so it does not require a reference), and requires both read 1 and read 2 to be equal to the read ...
"Super deduper, fast PCR duplicate detection in fastq files." In Proceedings of the 6th ACM Conference on Bioinformatics, Computational Biology and Health ...
Jan 30, 2020 · Super Deduper (SD) (Petersen et al., 2015) is an interesting tool for PCR duplicate removal, as it examines only a small portion of each reads ( ...
