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ORCIDSarah Cohen Boulakia
Person information
- affiliation: University of Paris-Sud, Laboratory for Computer Science (LRI), France
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2020 – today
- 2023
[j21]Thomas Cokelaer
, Sarah Cohen-Boulakia, Frédéric Lemoine:
Reprohackathons: promoting reproducibility in bioinformatics through training. Bioinform. 39(Supplement-1): 11-20 (2023)- [j20]Pierre Andrieu, Sarah Cohen-Boulakia, Miguel Couceiro, Alain Denise, Adeline Pierrot:
A unifying rank aggregation framework to suitably and efficiently aggregate any kind of rankings. Int. J. Approx. Reason. 162: 109035 (2023) - [c26]Clémence Sebe, Aurélie Névéol, Sarah Cohen-Boulakia, Alban Gaignard:
Extraction d'informations sur les workflows scientifiques à partir de la littérature. EGC 2023: 313-320 - 2022
- [c25]Sarah Cohen-Boulakia:
FAIR ScientificWorkflows: Status, Challenges and Research Opportunities. EGC 2022: 7-8 - 2021
- [j19]Pierre Andrieu, Bryan Brancotte, Laurent Bulteau, Sarah Cohen-Boulakia, Alain Denise, Adeline Pierrot, Stéphane Vialette:
Efficient, robust and effective rank aggregation for massive biological datasets. Future Gener. Comput. Syst. 124: 406-421 (2021) - [c24]Véronique Benzaken, Sarah Cohen-Boulakia, Evelyne Contejean, Chantal Keller, Rébecca Zucchini:
A Coq formalization of data provenance. CPP 2021: 152-162 - 2020
- [j18]Carole A. Goble, Sarah Cohen-Boulakia, Stian Soiland-Reyes, Daniel Garijo, Yolanda Gil, Michael R. Crusoe, Kristian Peters, Daniel Schober:
FAIR Computational Workflows. Data Intell. 2(1-2): 108-121 (2020)
2010 – 2019
- 2019
- [j17]Christophe Pradal, Sarah Cohen-Boulakia, Patrick Valduriez, Dennis E. Shasha, Konrad Hinsen, Matthew A. Turk:
VersionClimber: Version Upgrades Without Tears. Comput. Sci. Eng. 21(5): 87-93 (2019) - [j16]Frédéric Lemoine, Damien Correia, Vincent Lefort, Olivia Doppelt-Azeroual, Fabien Mareuil, Sarah Cohen-Boulakia, Olivier Gascuel:
NGPhylogeny.fr: new generation phylogenetic services for non-specialists. Nucleic Acids Res. 47(Webserver-Issue): W260-W265 (2019) - [c23]Pierre Andrieu, Bryan Brancotte, Laurent Bulteau, Sarah Cohen-Boulakia, Alain Denise, Adeline Pierrot, Stéphane Vialette:
Reliability-Aware and Graph-Based Approach for Rank Aggregation of Biological Data. eScience 2019: 136-145 - 2018
- [c22]Karima Rafes, Serge Abiteboul, Sarah Cohen Boulakia, Bastien Rance:
Designing Scientific SPARQL Queries Using Autocompletion by Snippets. eScience 2018: 234-244 - [r6]Sarah Cohen Boulakia, Wang-Chiew Tan:
Provenance in Scientific Databases. Encyclopedia of Database Systems (2nd ed.) 2018 - [r5]Zoé Lacroix, Cartik R. Kothari, Peter Mork, Rami Rifaieh, Mark D. Wilkinson, Juliana Freire, Sarah Cohen Boulakia:
Biological Resource Discovery. Encyclopedia of Database Systems (2nd ed.) 2018 - [r4]Zoé Lacroix, Cartik R. Kothari, Peter Mork, Mark D. Wilkinson, Sarah Cohen Boulakia:
Biological Metadata Management. Encyclopedia of Database Systems (2nd ed.) 2018 - [i1]Christophe Pradal, Sarah Cohen Boulakia, Gaëtan Heidsieck, Esther Pacitti, François Tardieu, Patrick Valduriez:
Distributed Management of Scientific Workflows for High-Throughput Plant Phenotyping. ERCIM News 2018(113) (2018) - 2017
- [j15]Christophe Pradal, Simon Artzet, Jérôme Chopard, Dimitri Dupuis, Christian Fournier, Michael Mielewczik, Vincent Nègre, Pascal Neveu, Didier Parigot, Patrick Valduriez, Sarah Cohen Boulakia:
InfraPhenoGrid: A scientific workflow infrastructure for plant phenomics on the Grid. Future Gener. Comput. Syst. 67: 341-353 (2017) - [j14]Sarah Cohen Boulakia, Khalid Belhajjame, Olivier Collin, Jérôme Chopard, Christine Froidevaux, Alban Gaignard, Konrad Hinsen, Pierre Larmande, Yvan Le Bras, Frédéric Lemoine, Fabien Mareuil, Hervé Ménager, Christophe Pradal, Christophe Blanchet:
Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities. Future Gener. Comput. Syst. 75: 284-298 (2017) - 2016
- [j13]Johannes Starlinger, Sarah Cohen Boulakia, Sanjeev Khanna, Susan B. Davidson, Ulf Leser:
Effective and efficient similarity search in scientific workflow repositories. Future Gener. Comput. Syst. 56: 584-594 (2016) - [c21]Vincent Henry, Arnaud Ferré, Christine Froidevaux, Anne Goelzer, Vincent Fromion, Sarah Cohen Boulakia, Sandra Dérozier, Marc Dinh, Ghislain Fiévet, Stephan Fischer, Jean-François Gibrat, Valentin Loux, Sabine Pérès:
Représentation systémique multi-échelle des processus biologiques de la bactérie. IC 2016: 97-102 - [e3]Sarah Cohen Boulakia:
8th USENIX Workshop on the Theory and Practice of Provenance, TaPP 2016, Washington, D.C., USA, June 8-9, 2016. USENIX Association 2016 [contents] - 2015
- [b1]Sarah Cohen Boulakia:
Data Integration in the Life Sciences: Scientific Workflows, Provenance, and Ranking. University of Paris-Sud, Orsay, France, 2015 - [j12]Bryan Brancotte, Bo Yang, Guillaume Blin, Sarah Cohen Boulakia, Alain Denise, Sylvie Hamel:
Rank aggregation with ties: Experiments and Analysis. Proc. VLDB Endow. 8(11): 1202-1213 (2015) - [c20]Jean-Baptiste Escudié, Anne-Sophie Jannot, Eric Zapletal, Sarah Cohen Boulakia, Georgia Malamut, Anita Burgun, Bastien Rance:
Reviewing 741 patients records in two hours with FASTVISU. AMIA 2015 - [c19]Christophe Pradal, Christian Fournier, Patrick Valduriez, Sarah Cohen Boulakia:
OpenAlea: scientific workflows combining data analysis and simulation. SSDBM 2015: 11:1-11:6 - 2014
- [j11]Sarah Cohen Boulakia, Jiuqiang Chen, Paolo Missier, Carole A. Goble, Alan R. Williams, Christine Froidevaux:
Distilling structure in Taverna scientific workflows: a refactoring approach. BMC Bioinform. 15(S-1): S12 (2014) - [j10]Johannes Starlinger, Bryan Brancotte, Sarah Cohen Boulakia, Ulf Leser:
Similarity Search for Scientific Workflows. Proc. VLDB Endow. 7(12): 1143-1154 (2014) - [c18]Bryan Brancotte, Bastien Rance, Alain Denise, Sarah Cohen Boulakia:
ConQuR-Bio: Consensus Ranking with Query Reformulation for Biological Data. DILS 2014: 128-142 - [c17]Johannes Starlinger, Sarah Cohen Boulakia, Sanjeev Khanna, Susan B. Davidson, Ulf Leser:
Layer Decomposition: An Effective Structure-Based Approach for Scientific Workflow Similarity. eScience 2014: 169-176 - [c16]Jiuqiang Chen, Sarah Cohen Boulakia, Christine Froidevaux, Carole A. Goble, Paolo Missier, Alan R. Williams:
DistillFlow: removing redundancy in scientific workflows. SSDBM 2014: 46:1-46:4 - 2012
- [c15]Sarah Cohen Boulakia, Christine Froidevaux, Jiuqiang Chen:
Scientific workflow rewriting while preserving provenance. eScience 2012: 1-9 - [c14]Johannes Starlinger, Sarah Cohen Boulakia, Ulf Leser:
(Re)Use in Public Scientific Workflow Repositories. SSDBM 2012: 361-378 - 2011
- [j9]Bryan Brancotte, Anne Biton, Isabelle Bernard-Pierrot, François Radvanyi, Fabien Reyal, Sarah Cohen Boulakia:
Gene List significance at-a-glance with GeneValorization. Bioinform. 27(8): 1187-1189 (2011) - [j8]Sarah Cohen Boulakia, Ulf Leser:
Search, adapt, and reuse: the future of scientific workflows. SIGMOD Rec. 40(2): 6-16 (2011) - [c13]Sarah Cohen Boulakia, Ulf Leser:
Next generation data integration for Life Sciences. ICDE 2011: 1366-1369 - [c12]Sarah Cohen Boulakia, Alain Denise, Sylvie Hamel:
Using Medians to Generate Consensus Rankings for Biological Data. SSDBM 2011: 73-90
2000 – 2009
- 2009
- [j7]Zhuowei Bao, Sarah Cohen Boulakia, Susan B. Davidson, Pierrick Girard:
PDiffView: Viewing the Difference in Provenance of Workflow Results. Proc. VLDB Endow. 2(2): 1638-1641 (2009) - [c11]Zhuowei Bao, Sarah Cohen Boulakia, Susan B. Davidson, Anat Eyal, Sanjeev Khanna:
Differencing Provenance in Scientific Workflows. ICDE 2009: 808-819 - [c10]Susan B. Davidson, Yi Chen, Peng Sun, Sarah Cohen Boulakia:
On User Views in Scientific Workflow Systems. SWPM 2009 - [c9]Sarah Cohen Boulakia, Kevin Masini:
BioBrowsing: Making the Most of the Data Available in Entrez. SSDBM 2009: 283-291 - [r3]Zoé Lacroix, Cartik R. Kothari, Peter Mork, Mark D. Wilkinson, Sarah Cohen Boulakia:
Biological Metadata Management. Encyclopedia of Database Systems 2009: 215-219 - [r2]Zoé Lacroix, Cartik R. Kothari, Peter Mork, Rami Rifaieh, Mark D. Wilkinson, Juliana Freire, Sarah Cohen Boulakia:
Biological Resource Discovery. Encyclopedia of Database Systems 2009: 220-223 - [r1]Sarah Cohen Boulakia, Wang Chiew Tan:
Provenance in Scientific Databases. Encyclopedia of Database Systems 2009: 2202-2207 - 2008
- [j6]Amos Bairoch, Sarah Cohen Boulakia, Christine Froidevaux:
Review of the selected proceedings of the Fifth International Workshop on Data Integration in the Life Sciences 2008. BMC Bioinform. 9(S-8) (2008) - [j5]Luc Moreau, Bertram Ludäscher, Ilkay Altintas, Roger S. Barga, Shawn Bowers, Steven P. Callahan, George Chin Jr., Ben Clifford, Shirley Cohen, Sarah Cohen Boulakia, Susan B. Davidson, Ewa Deelman, Luciano A. Digiampietri, Ian T. Foster, Juliana Freire, James Frew, Joe Futrelle, Tara Gibson, Yolanda Gil, Carole A. Goble, Jennifer Golbeck, Paul Groth, David A. Holland, Sheng Jiang, Jihie Kim, David Koop, Ales Krenek, Timothy M. McPhillips, Gaurang Mehta, Simon Miles, Dominic Metzger, Steve Munroe, Jim Myers, Beth Plale, Norbert Podhorszki, Varun Ratnakar, Emanuele Santos, Carlos Eduardo Scheidegger, Karen Schuchardt, Margo I. Seltzer, Yogesh L. Simmhan, Cláudio T. Silva, Peter Slaughter, Eric G. Stephan, Robert Stevens, Daniele Turi, Huy T. Vo, Michael Wilde, Jun Zhao, Yong Zhao:
Special Issue: The First Provenance Challenge. Concurr. Comput. Pract. Exp. 20(5): 409-418 (2008) - [j4]Sarah Cohen Boulakia, Olivier Biton, Shirley Cohen, Susan B. Davidson:
Addressing the provenance challenge using ZOOM. Concurr. Comput. Pract. Exp. 20(5): 497-506 (2008) - [c8]Olivier Biton, Sarah Cohen Boulakia, Susan B. Davidson, Carmem S. Hara:
Querying and Managing Provenance through User Views in Scientific Workflows. ICDE 2008: 1072-1081 - [e2]Amos Bairoch, Sarah Cohen Boulakia, Christine Froidevaux:
Data Integration in the Life Sciences, 5th International Workshop, DILS 2008, Evry, France, June 25-27, 2008. Proceedings. Lecture Notes in Computer Science 5109, Springer 2008, ISBN 978-3-540-69827-2 [contents] - 2007
- [j3]Sarah Cohen Boulakia, Olivier Biton, Susan B. Davidson, Christine Froidevaux:
BioGuideSRS: querying multiple sources with a user-centric perspective. Bioinform. 23(10): 1301-1303 (2007) - [j2]Susan B. Davidson, Sarah Cohen Boulakia, Anat Eyal, Bertram Ludäscher, Timothy M. McPhillips, Shawn Bowers, Manish Kumar Anand, Juliana Freire:
Provenance in Scientific Workflow Systems. IEEE Data Eng. Bull. 30(4): 44-50 (2007) - [c7]Olivier Biton, Sarah Cohen Boulakia, Susan B. Davidson:
Zoom*UserViews: Querying Relevant Provenance in Workflow Systems. VLDB 2007: 1366-1369 - [e1]Sarah Cohen Boulakia, Val Tannen:
Data Integration in the Life Sciences, 4th International Workshop, DILS 2007, Philadelphia, PA, USA, June 27-29, 2007, Proceedings. Lecture Notes in Computer Science 4544, Springer 2007, ISBN 978-3-540-73254-9 [contents] - 2006
- [j1]Sarah Cohen Boulakia, Susan B. Davidson, Christine Froidevaux, Zoé Lacroix, Maria-Esther Vidal:
Path-based Systems to Guide Scientists in the Maze of Biological Data Sources. J. Bioinform. Comput. Biol. 4(5): 1069-1096 (2006) - [c6]Shirley Cohen, Sarah Cohen Boulakia, Susan B. Davidson:
Towards a Model of Provenance and User Views in Scientific Workflows. DILS 2006: 264-279 - [c5]Sarah Cohen Boulakia, Christine Froidevaux, Emmanuel Pietriga:
Selecting Biological Data Sources and Tools with XPR, a Path Language for RDF. Pacific Symposium on Biocomputing 2006: 116-127 - 2005
- [c4]Sarah Cohen Boulakia, Susan B. Davidson, Christine Froidevaux:
A User-Centric Framework for Accessing Biological Sources and Tools. DILS 2005: 3-18 - 2004
- [c3]Alain Bidault, Sarah Cohen Boulakia, Christine Froidevaux:
Preferences for Queries in a Mediator Approach. ECAI 2004: 963-964 - [c2]Sarah Cohen Boulakia, Christine Froidevaux, Séverine Lair:
Interrogation de sources biomédicales : prise en compte des préférences de l'utilisateur. EGC 2004: 53-64 - [c1]Sarah Cohen Boulakia, Séverine Lair, Nicolas Stransky, Stéphane Graziani, François Radvanyi, Emmanuel Barillot, Christine Froidevaux:
Selecting biomedical data sources according to user preferences. ISMB/ECCB (Supplement of Bioinformatics) 2004: 86-93
Coauthor Index
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