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ORCIDGil Alterovitz
Person information
- affiliation: Harvard Medical School, Boston, MA, USA
- affiliation (former): MIT, Cambridge, USA
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2020 – today
- 2024
[i3]Nicholas Yan, Gil Alterovitz:
A General-purpose AI Avatar in Healthcare. CoRR abs/2401.12981 (2024)- 2023
- [j40]Christos A. Makridis
, Anthony Boese, Rafael Fricks, Don E. Workman, Molly Klote, Joshua Mueller, Isabel J. Hildebrandt, Michael Kim, Gil Alterovitz:
Informing the ethical review of human subjects research utilizing artificial intelligence. Frontiers Comput. Sci. 5 (2023) - [j39]José Lezama, Gil Alterovitz, Colleen E. Jakey, Ana L. Kraus, Michael J. Kim, Andrew A. Borkowski:
Predicting ward transfer mortality with machine learning. Frontiers Artif. Intell. 6 (2023) - [j38]Robert H. Dolin, Bret S. E. Heale, Gil Alterovitz, Rohan Gupta, Justin Aronson, Aziz A. Boxwala, Shaileshbhai R. Gothi, David Haines, Arthur Hermann, Tonya Hongsermeier, Ammar Husami, James Jones, Frank Naeymi-Rad, Barbara Rapchak, Chandan Ravishankar, James Shalaby, May Terry, Ning Xie, Powell Zhang, Srikar Chamala:
Introducing HL7 FHIR Genomics Operations: a developer-friendly approach to genomics-EHR integration. J. Am. Medical Informatics Assoc. 30(3): 485-493 (2023) - [c25]Matthew Clark, Christopher Meyer, Jaime Ramos-Cejudo, Danne C. Elbers, Karen E. Pierce-Murray, Rafael Fricks, Gil Alterovitz, Luigi Rao, Mary T. Brophy, Nhan V. Do, Robert L. Grossman, Nathanael R. Fillmore:
Transfer Learning for Mortality Prediction in Non-Small Cell Lung Cancer with Low-Resolution Histopathology Slide Snapshots. MedInfo 2023: 735-739 - 2022
- [j37]Ken Wiley, Laura Findley, Madison Goldrich, Tejinder K. Rakhra-Burris, Ana Stevens, Pamela Williams, Carol J. Bult, Rex L. Chisholm, Patricia Deverka, Geoffrey S. Ginsburg, Eric D. Green, Gail P. Jarvik, George A. Mensah, Erin Ramos, Mary V. Relling, Dan M. Roden, Robb Rowley, Gil Alterovitz, Samuel J. Aronson, Lisa Bastarache, James J. Cimino, Erin L. Crowgey, Guilherme Del Fiol, Robert R. Freimuth, Mark A. Hoffman, Janina M. Jeff, Kevin B. Johnson, Kensaku Kawamoto, Subha Madhavan, Eneida A. Mendonça, Lucila Ohno-Machado, Siddharth Pratap, Casey Overby Taylor, Marylyn D. Ritchie, Nephi Walton, Chunhua Weng, Teresa Zayas-Cabán, Teri A. Manolio, Marc S. Williams:
A research agenda to support the development and implementation of genomics-based clinical informatics tools and resources. J. Am. Medical Informatics Assoc. 29(8): 1342-1349 (2022) - 2021
- [j36]Zhengyang Dong, Gil Alterovitz:
netAE: semi-supervised dimensionality reduction of single-cell RNA sequencing to facilitate cell labeling. Bioinform. 37(1): 43-49 (2021) - [j35]Robert H. Dolin, Shaileshbhai R. Gothi, Aziz A. Boxwala, Bret S. E. Heale, Ammar Husami, James Jones, Himanshu Khangar, Shubham Londhe, Frank Naeymi-Rad, Soujanya Rao, Barbara Rapchak, James Shalaby, Varun Suraj, Ning Xie, Srikar Chamala, Gil Alterovitz:
vcf2fhir: a utility to convert VCF files into HL7 FHIR format for genomics-EHR integration. BMC Bioinform. 22(1): 104 (2021) - [j34]Christos A. Makridis, David Y. Zhao, Cosmin Adrian Bejan, Gil Alterovitz:
Leveraging machine learning to characterize the role of socio-economic determinants on physical health and well-being among veterans. Comput. Biol. Medicine 133: 104354 (2021) - [j33]Andrew Zhang, Ling Teng, Gil Alterovitz:
An explainable machine learning platform for pyrazinamide resistance prediction and genetic feature identification of Mycobacterium tuberculosis. J. Am. Medical Informatics Assoc. 28(3): 533-540 (2021) - [j32]Aly Khalifa, Clinton C. Mason, Jennifer H. Garvin, Marc S. Williams, Guilherme Del Fiol, Brian R. Jackson, Steven B. Bleyl, Gil Alterovitz, Stanley M. Huff:
Interoperable genetic lab test reports: mapping key data elements to HL7 FHIR specifications and professional reporting guidelines. J. Am. Medical Informatics Assoc. 28(12): 2617-2625 (2021) - [c24]Gil Alterovitz, Wei-Lun Alterovitz, Gail H. Cassell, Lixin Zhang, A. Keith Dunker:
AI for infectious disease modelling and therapeutics. PSB 2021 - [c23]Christos A. Makridis, Anish Mudide, Gil Alterovitz:
How Much Does the (Social) Environment Matter? Using Artificial Intelligence to Predict COVID-19 Outcomes with Socio-demographic Data. PSB 2021 - [c22]Anish Mudide, Gil Alterovitz:
SARS-CoV-2 Drug Discovery based on Intrinsically Disordered Regions. PSB 2021 - [i2]Jungang Zou, Fan Lin, Beizhan Wang, Siyu Gao, Gaoshan Deng, Wenhua Zeng, Gil Alterovitz:
Transfer Learning Based Multi-Objective Evolutionary Algorithm for Community Detection of Dynamic Complex Networks. CoRR abs/2109.15136 (2021) - 2020
- [j31]Nathan D. Seligson, Jeremy L. Warner, William S. Dalton, David Martin, Robert S. Miller, Debra Patt, Kenneth L. Kehl, Matvey B. Palchuk, Gil Alterovitz, Laura K. Wiley, Ming Huang, Feichen Shen, Yanshan Wang, Khoa A. Nguyen, Anthony F. Wong, Funda Meric-Bernstam, Elmer V. Bernstam, James L. Chen:
Recommendations for patient similarity classes: results of the AMIA 2019 workshop on defining patient similarity. J. Am. Medical Informatics Assoc. 27(11): 1808-1812 (2020) - [j30]Jing Yang, Na Li, Ning An, Yu Chen, Gil Alterovitz:
An efficient causal structure learning algorithm for linear arbitrarily distributed continuous data. J. Supercomput. 76(5): 3355-3363 (2020) - [c21]Lingling Zhang, Ning An, Huitong Ding, Ning Xie, Chi Zhang, Gil Alterovitz:
Personal Cognitive Health Library. AMIA 2020 - [c20]Suzanne Parete-Koon, Peter F. Peterson, Garrett E. Granroth, Wenduo Zhou, Pravallika Devineni, Nouamane Laanait, Junqi Yin, Albina Y. Borisevich, Ketan Maheshwari, Melissa R. Allen-Dumas, Srinath Ravulaparthy, Kuldeep R. Kurte, Jibo Sanyal, Anne Berres, Olivera Kotevska, Folami Alamudun, Keith Gray, Max Grossman, Anar Yusifov, Ioana Danciu, Gil Alterovitz, Dasha Herrmannova:
Smoky Mountain Data Challenge 2020: An Open Call to Solve Data Problems in the Areas of Neutron Science, Material Science, Urban Modeling and Dynamics, Geophysics, and Biomedical Informatics. SMC 2020: 425-442 - [i1]Huitong Ding, Chi Zhang, Ning An, Lingling Zhang, Ning Xie, Gil Alterovitz:
Digital personal health libraries: a systematic literature review. CoRR abs/2006.11686 (2020)
2010 – 2019
- 2019
- [j29]Kangkang Li, Xiuze Zhou, Fan Lin, Wenhua Zeng, Gil Alterovitz:
Deep Probabilistic Matrix Factorization Framework for Online Collaborative Filtering. IEEE Access 7: 56117-56128 (2019) - [j28]Xiujin Wu, Wenhua Zeng, Yuxiu Xu, Beizhan Wang, Xiangrong Liu, Fan Lin, Gil Alterovitz:
Predicting of Associations Between MicroRNA and Human Diseases Based on Multiple Similarities and Arbitrarily-Order Proximity Network Embedding. IEEE Access 7: 86625-86634 (2019) - [j27]Ning An, Yongbo Xiao, Jing Yuan, Jiaoyun Yang, Gil Alterovitz:
Extracting causal relations from the literature with word vector mapping. Comput. Biol. Medicine 115 (2019) - [j26]Kangkang Li, Xiuze Zhou, Fan Lin, Wenhua Zeng, Beizhan Wang, Gil Alterovitz:
Sparse online collaborative filtering with dynamic regularization. Inf. Sci. 505: 535-548 (2019) - 2018
- [j25]Aiguo Wang, Ning An, Guilin Chen, Li Liu, Gil Alterovitz:
Subtype dependent biomarker identification and tumor classification from gene expression profiles. Knowl. Based Syst. 146: 104-117 (2018) - 2017
- [j24]Jiaoyun Yang, Haipeng Wang, Huitong Ding, Ning An, Gil Alterovitz:
Nonlinear dimensionality reduction methods for synthetic biology biobricks' visualization. BMC Bioinform. 18(1): 47:1-47:10 (2017) - [j23]Amin Zollanvari, Gil Alterovitz:
SNP by SNP by environment interaction network of alcoholism. BMC Syst. Biol. 11(3): 19:1-19:11 (2017) - [j22]Aiguo Wang, Ning An, Jing Yang, Guilin Chen, Lian Li, Gil Alterovitz:
Wrapper-based gene selection with Markov blanket. Comput. Biol. Medicine 81: 11-23 (2017) - [j21]Jiaoyun Yang, Song Yu, Bowen Gong, Ning An, Gil Alterovitz:
Biobrick chain recommendations for genetic circuit design. Comput. Biol. Medicine 86: 31-39 (2017) - 2016
- [j20]Arnav Kapur, Kshitij Marwah, Gil Alterovitz:
Gene expression prediction using low-rank matrix completion. BMC Bioinform. 17: 243 (2016) - [j19]Jeremy L. Warner, Matthew J. Rioth, Kenneth D. Mandl, Joshua C. Mandel, David A. Kreda, Isaac S. Kohane, Daniel Carbone, Ross Oreto, Lucy Wang, Shilin Zhu, Heming Yao, Gil Alterovitz:
SMART precision cancer medicine: a FHIR-based app to provide genomic information at the point of care. J. Am. Medical Informatics Assoc. 23(4): 701-710 (2016) - [j18]Jeremy L. Warner, Peijin Zhang, Jenny Liu, Gil Alterovitz:
Classification of hospital acquired complications using temporal clinical information from a large electronic health record. J. Biomed. Informatics 59: 209-217 (2016) - [j17]Jing Yang, Ning An, Gil Alterovitz:
A Partial Correlation Statistic Structure Learning Algorithm Under Linear Structural Equation Models. IEEE Trans. Knowl. Data Eng. 28(10): 2552-2565 (2016) - 2015
- [j16]Aiguo Wang, Ning An, Guilin Chen, Lian Li, Gil Alterovitz:
Improving PLS-RFE based gene selection for microarray data classification. Comput. Biol. Medicine 62: 14-24 (2015) - [j15]Aiguo Wang, Ning An, Guilin Chen, Lian Li, Gil Alterovitz:
Predicting hypertension without measurement: A non-invasive, questionnaire-based approach. Expert Syst. Appl. 42(21): 7601-7609 (2015) - [j14]Jeremy L. Warner, Joshua C. Denny, David A. Kreda, Gil Alterovitz:
Seeing the forest through the trees: uncovering phenomic complexity through interactive network visualization. J. Am. Medical Informatics Assoc. 22(2): 324-329 (2015) - [j13]Gil Alterovitz, Jeremy L. Warner, Peijin Zhang, Yishen Chen, Mollie Ullman-Cullere, David A. Kreda, Isaac S. Kohane:
SMART on FHIR Genomics: facilitating standardized clinico-genomic apps. J. Am. Medical Informatics Assoc. 22(6): 1173-1178 (2015) - [j12]Aiguo Wang, Ning An, Guilin Chen, Lian Li, Gil Alterovitz:
Accelerating wrapper-based feature selection with K-nearest-neighbor. Knowl. Based Syst. 83: 81-91 (2015) - 2014
- [j11]Yang Li, Yinsheng Wei, Bingfei Li, Gil Alterovitz:
Modified Anderson-Darling Test-Based Target Detector in Non-Homogenous Environments. Sensors 14(9): 16046-16061 (2014) - [c19]Aiguo Wang, Ning An, Guilin Chen, Lian Li, Gil Alterovitz:
Accelerating incremental wrapper based gene selection with K-Nearest-Neighbor. BIBM 2014: 21-23 - [c18]Aiguo Wang, Ning An, Guilin Chen, Jing Yang, Lian Li, Gil Alterovitz:
Incremental wrapper based gene selection with Markov blanket. BIBM 2014: 74-79 - [c17]Swetha S. Bobba, Amin Zollanvari, Gil Alterovitz:
Bayesian Prognostic Model for Genomic Discovery in Bipolar Disorder. BIOINFORMATICS 2014: 91-98 - 2013
- [j10]Jeremy L. Warner, Gil Alterovitz, Kelly Bodio, Robin M. Joyce:
Brief communication: External phenome analysis enables a rational federated query strategy to detect changing rates of treatment-related complications associated with multiple myeloma. J. Am. Medical Informatics Assoc. 20(4): 696-699 (2013) - [c16]Michael C. Gao, Jeremy L. Warner, Peter C. Yang, Gil Alterovitz:
Constructing a Novel Cancer Ontology. AMIA 2013 - [c15]Jeremy L. Warner, Gil Alterovitz, Joshua C. Denny, Robert Fassett, Kevin S. Hughes:
Sharing of Genomic Information: Perspectives from Stakeholders. AMIA 2013 - [c14]Jeremy L. Warner, Quan Ding, David A. Kreda, Zi'ou Zheng, Keshav Gupta, Joshua C. Denny, Gil Alterovitz:
Phenometric analysis of electronic health records: a new approach to visualization of high dimensional biomedical information. AMIA 2013 - [c13]Jing Yang, Ning An, Gil Alterovitz, Lian Li, Aiguo Wang:
Causal discovery based on healthcare information. BIBM 2013: 71-73 - [c12]Jeremy L. Warner, Peter C. Yang, Gil Alterovitz:
Automated Synthesis and Visualization of a Chemotherapy Treatment Regimen Network. MedInfo 2013: 62-66 - [c11]Jeremy L. Warner, Joshua C. Denny, David A. Kreda, Gil Alterovitz:
Analytic Approaches to Phenotypic Complexity. MedInfo 2013: 1267 - 2012
- [j9]Chang F. Quo, Chanchala Kaddi, John H. Phan, Amin Zollanvari, Mingqing Xu, May D. Wang, Gil Alterovitz:
Reverse engineering biomolecular systems using -omic data: challenges, progress and opportunities. Briefings Bioinform. 13(4): 430-445 (2012) - [c10]Jeremy L. Warner, Gil Alterovitz:
Phenome-Based Analysis as a Means for Discovering Context-Dependent Clinical Reference Ranges. AMIA 2012 - 2011
- [c9]Amin Zollanvari, Nancy L. Saccone, Laura J. Bierut, Marco Ramoni, Gil Alterovitz:
Is the reduction of dimensionality to a small number of features always necessary in constructing predictive models for analysis of complex diseases or behaviours? EMBC 2011: 3573-3576 - [c8]Gil Alterovitz, Silvio Cavalcanti, Taro Muso, Marco Ramoni, May Wang:
Session Introduction. Pacific Symposium on Biocomputing 2011: 300-301 - 2010
- [j8]Gil Alterovitz, Taro Muso, Marco Ramoni:
The challenges of informatics in synthetic biology: from biomolecular networks to artificial organisms. Briefings Bioinform. 11(1): 80-95 (2010) - [j7]Hsun-Hsien Chang, Michael J. McGeachie, Gil Alterovitz, Marco Ramoni:
Mapping transcription mechanisms from multimodal genomic data. BMC Bioinform. 11(S-9): S2 (2010) - [j6]Olgica Milenkovic, Gil Alterovitz, Gerard Battail, Todd P. Coleman, Joachim Hagenauer, Sean P. Meyn, Nathan D. Price, Marco Ramoni, Ilya Shmulevich, Wojciech Szpankowski:
Introduction to the special issue on information theory in molecular biology and neuroscience. IEEE Trans. Inf. Theory 56(2): 649-652 (2010) - [c7]Gil Alterovitz, Silvio Cavalcanti, Taro Muso, Marco Ramoni, May Wang:
Session Introduction. Pacific Symposium on Biocomputing 2010: 383-384
2000 – 2009
- 2009
- [c6]Gil Alterovitz, Judith A. Blake, Jonathan M. Dreyfuss, Drew Endy, Marco Ramoni:
Session Introduction. Pacific Symposium on Biocomputing 2009: 1-3 - 2008
- [j5]Gil Alterovitz, Adnaan Jiwaji, Marco Ramoni:
Automated programming for bioinformatics algorithm deployment. Bioinform. 24(3): 450-451 (2008) - [c5]Aaron McKenna, Gil Alterovitz:
An information theoretic framework for genomic data analysis. BIBE 2008: 1-3 - [c4]Gil Alterovitz, Michael Xiang, Jonathan Liu, Amelia Chang, Marco Ramoni:
System-Wide Peripheral Biomarker Discovery Using Information Theory. Pacific Symposium on Biocomputing 2008: 231-242 - 2007
- [j4]Gil Alterovitz, Michael Xiang, Mamta Mohan, Marco Ramoni:
GO PaD: the Gene Ontology Partition Database. Nucleic Acids Res. 35(Database-Issue): 322-327 (2007) - [j3]Gil Alterovitz, Marco Ramoni:
Bioinformatics and Proteomics: An Engineering Problem Solving-Based Approach. IEEE Trans. Educ. 50(1): 49-54 (2007) - [j2]Gil Alterovitz, Marco Ramoni:
Erratum to "Bioinformatics and Proteomics: An Engineering Problem Solving-Based Approach". IEEE Trans. Educ. 50(2): 170 (2007) - [c3]Gil Alterovitz, Eugenia Lyashenko, Michael Xiang, Marco Ramoni:
Linking Protein Mass with Function via Organismal Massome Networks. BIBE 2007: 59-65 - [c2]Gil Alterovitz, Taro Muso, Paresh Malalur, Marco Ramoni:
A Systematic Approach to Quantifying Evolutionary Functional Trends Across the Universal Tree of Life. BIBE 2007: 374-378 - 2006
- [j1]Gil Alterovitz, Vinayak Muralidhar, Marco Ramoni:
Gene Lethality Detection and Characterization via Topological Analysis of Regulatory Networks. IEEE Trans. Circuits Syst. I Regul. Pap. 53-I(11): 2438-2443 (2006) - [c1]Gil Alterovitz, Marco Ramoni:
Discovering Biological Guilds through Topological Abstraction. AMIA 2006
Coauthor Index
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