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Vol-3603
urn:nbn:de:0074-3603-6
Copyright © 2023 for
the individual papers by the papers' authors.
Copyright © 2023 for the volume
as a collection by its editors.
This volume and its papers are published under the
Creative Commons License Attribution 4.0 International
(CC BY 4.0).
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ICBO 2023
International Conference on Biomedical Ontologies 2023
Proceedings of the International Conference on Biomedical Ontologies 2023
together with the Workshop on Ontologies for Infectious and Immune-Mediated Disease Data Science (OIIDDS 2023)
and the FAIR Ontology Harmonization and TRUST Data Interoperability Workshop (FOHTI 2023)
Brasília, Brazil, August 28 - September 1,2023.
Edited by
*
University of Brasilia (UnB),Faculty of Information Science, Brasilia,
Brazil
**
FUMEC University, Postgraduate Program in Information and Communication
Technology and Knowledge Management (PPGTICGC), Belo Horizonte, Brazil
***
Federal University of Itajubá (UNIFEI), Institute of Technological
Sciences, Itabira, Brazil
Table of Contents
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Preface
Summary: There were 24 papers submitted for peer-review to the main
conference. Out of these,
20 papers were accepted for this volume:
14 as regular/full papers,
2 as short papers,
4 as poster abstracts.
Click here to download the full conference proceedings PDF.
Session 1: Main Conference
Full Papers
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Ontology-based Representation and Analysis of Conditional Vaccine Immune Responses
Using Omics Data
1-12
Anthony Huffman,
Edison Ong,
Tim Brunson,
Nasim Sanati,
Jie Zheng,
Anna Maria Masci,
Guanming Wu,
Yongqun He
-
Exploring the Use of Ontology Components for Distantly-Supervised Disease and
Phenotype Named Entity Recognition
13-24
Sumyyah Toonsi,
Senay Kafkas,
Robert Hoehndorf
-
An Extendible Realism-Based Ontology for Kinship
25-35
Michael Rabenberg,
Anuwat Pengput,
Werner Ceusters
-
Towards Principles of Ontology-Based Annotation of Clinical Narratives
36-47
Stefan Schulz,
Warren Del-Pinto,
Lifeng Han,
Markus Kreuzthaler,
Sareh Aghaei Dinani,
Goran Nenadic
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An Ontology for Mammography Screening Recommendation
48-59
Cindy Acuña,
Yasmine Anchén,
Edelweis Rohrer,
Regina Motz
-
An Application of Natural Language Processing and Ontologies
to Electronic Healthcare Records in the Field of Gynecology
60-69
Amanda Damasceno de Souza,
Fernanda Farinelli,
Eduardo Ribeiro Felipe,
Armando Sérgio de Aguiar Filho,
Maurício Barcellos Almeida
-
The Potential of Ontologies for the Empirical Assessment of Machine Learning
Techniques in Operational Oceanography
70-81
Enrique Wulff
-
Concrete Names for Complex Expressions in Ontologies: A Survey of Biomedical
Ontologies
82-93
Christian Kindermann,
Martin Georg Skjæveland
-
Leveraging Biomedical Ontologies to Boost Performance of BERT-Based Models for
Answering Medical MCQs
94-105
Sahil,
P Sreenivasa Kumar
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The OntoWoH Ontology - a Women's Health Reference Ontology Detailing the Fragment of
Climacteric and Menopause
106-117
Cilenir Carla de Carvalho,
Andreia Soprani dos Santos,
Silvia Das Dores Rissino,
Susana Bubach,
Maria Das Graças Da Silva Teixeira
-
Using Ontology Embeddings With Deep Learning Architectures to Improve Prediction of
Ontology Concepts From Literature
118-129
Pratik Devkota,
Somya Mohanty,
Prashanti Manda
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KOSonto: an Ontology for Knowledge Organization Systems, Their Constituents, and Their
Referents
130-141
Jean Noël Nikiema,
Fleur Mougin,
Vianney Jouhet,
Stefan Schulz
-
Reuse and Enrichment for Building an Ontology for Obsessive-Compulsive
Disorder
142-153
Areej Muhajab,
Alia Abdelmoty,
Athanasios Hassoulas
-
Version Control for Interdependent Ontologies: Challenges and First Propositions
154-165
Paul Fabry,
Adrien Barton,
Jean-Francois Ethier
Short Papers
Poster Abstracts
-
A Method to Facilitate the Identification of FAIRification Objectives
179
César Bernabé,
Annika Jacobsen,
Luiz O. Bonino da S.S.,
Marco Roos
-
Taxonomy Proposal for Controlled Vocabulary Planning in the Pinakes Catalogue With
Tematres
180
Josina da Silva Vieira,
Letícia Santos de Jesus,
Tainá Batista de Assis
-
The Interplay of Wikidata and the Cell Ontology
181
Tiago Lubiana
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Tracking the Functional Effects of SARS-CoV-2 Genomic Variants: an Ontology-Driven
Approach
182-183
Madeline Iseminger,
Muhammad Zohaib Anwar,
Rhiannon Cameron,
Damion Dooley,
Paul Gordon,
Emma Griffiths,
Anoosha Sehar,
Khushi Vora,
William Hsiao
Session 2: Workshops, Tutorials and Software Demo
Workshop on Ontologies for Infectious and Immune-Mediated Disease Data Science (OIIDDS
2023)
Workshop on FAIR Ontology Harmonization and trust Data Interoperability (FOHTI
2023)
Tutorials Abstracts
Software Demo Abstract
2023-12-13: submitted by Fernanda Farinelli,
metadata incl. bibliographic data published under Creative Commons CC0
2023-12-31: published on CEUR Workshop Proceedings (CEUR-WS.org, ISSN 1613-0073)
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